Using the algebra of hypergraph for reconstruction phylogenetic trees
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Date
2009
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Maltepe Üniversitesi
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CC0 1.0 Universal
info:eu-repo/semantics/openAccess
info:eu-repo/semantics/openAccess
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Abstract
In this paper, we will construct phylogenetic trees by using the algebra of hypergraph through Neighbor Joining Algorithm. Directed hypergraph can represent metabolic networks M(X,), where X is the set of metabolites and is the set of chemistry reactions. Metabolic network datas are obtained from citric-acid cycle of microorganism of 3 classes, which are 4 Archea, 11 Bacteria and 1 Eukaryote. Moreover, the result will be compared to the phylogenetic tree based on nucleotide sequences of 16s rRNA Gene of the same microorganisms.
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Keywords
Phylogenetic tree, Algebra of hypergraph, Neighbor joining algorithm, Metabolic networks, Citric-acid cycle, Nucleotide sequence of 16s rRNA Gene
Journal or Series
International Conference of Mathematical Sciences
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Astuti, M., Dr. Irawati, Muchtadi-Alamsyah, I., Muchlis, A., Muliana, A. A. ve Halim, A. (2009). Using the algebra of hypergraph for reconstruction phylogenetic trees. Maltepe Üniversitesi. s. 285.
